IL_9VVI_074

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_074 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.1521

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9VVI|1|a|C|274
9VVI|1|a|C|275
9VVI|1|a|U|276
9VVI|1|a|G|277
9VVI|1|a|A|278
9VVI|1|a|A|279
9VVI|1|a|U|280
9VVI|1|a|C|281
*
9VVI|1|a|G|359
9VVI|1|a|U|360
9VVI|1|a|G|361
9VVI|1|a|A|362
9VVI|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains