IL_9VVI_095
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VVI_095 not in the Motif Atlas
- Geometric match to IL_9H3G_004
- Geometric discrepancy: 0.1291
- The information below is about IL_9H3G_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9VVI|1|a|G|875
9VVI|1|a|C|876
9VVI|1|a|A|877
9VVI|1|a|A|878
9VVI|1|a|G|879
*
9VVI|1|a|C|898
9VVI|1|a|A|899
9VVI|1|a|A|900
9VVI|1|a|C|901
9VVI|1|a|C|902
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Y
- Transfer RNA; tRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: