IL_9VVI_149

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUGUAGGAUAGGUGGGAG*CGACCUUGAAAUACCACCC

Length

37 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VVI|1|a|G|2110
9VVI|1|a|U|2111
9VVI|1|a|G|2112
9VVI|1|a|U|2113
9VVI|1|a|A|2114
9VVI|1|a|G|2115
9VVI|1|a|G|2116
9VVI|1|a|A|2117
9VVI|1|a|U|2118
9VVI|1|a|A|2119
9VVI|1|a|G|2120
9VVI|1|a|G|2121
9VVI|1|a|U|2122
9VVI|1|a|G|2123
9VVI|1|a|G|2124
9VVI|1|a|G|2125
9VVI|1|a|A|2126
9VVI|1|a|G|2127
*
9VVI|1|a|C|2161
9VVI|1|a|G|2162
9VVI|1|a|A|2163
9VVI|1|a|C|2164
9VVI|1|a|C|2165
9VVI|1|a|U|2166
9VVI|1|a|U|2167
9VVI|1|a|G|2168
9VVI|1|a|A|2169
9VVI|1|a|A|2170
9VVI|1|a|A|2171
9VVI|1|a|U|2172
9VVI|1|a|A|2173
9VVI|1|a|C|2174
9VVI|1|a|C|2175
9VVI|1|a|A|2176
9VVI|1|a|C|2177
9VVI|1|a|C|2178
9VVI|1|a|C|2179

Current chains

Chain a

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL1

Chain W

Probable ATP-binding protein YheS