IL_9VVI_151

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9VVI|1|a|U|2131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_151 not in the Motif Atlas

Geometric match to IL_9DFE_046

Geometric discrepancy: 0.2751

The information below is about IL_9DFE_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9VVI|1|a|C|2129
9VVI|1|a|U|2130
9VVI|1|a|U|2131
9VVI|1|a|U|2132
9VVI|1|a|G|2133
9VVI|1|a|A|2134
9VVI|1|a|A|2135
9VVI|1|a|G|2136
*
9VVI|1|a|U|2155
9VVI|1|a|G|2156
9VVI|1|a|G|2157
9VVI|1|a|A|2158
9VVI|1|a|G|2159

Current chains

Chain a

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL1