IL_9VVI_153

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

9VVI|1|a|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VVI_153 not in the Motif Atlas

Geometric match to IL_8B0X_146

Geometric discrepancy: 0.0917

The information below is about IL_8B0X_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9VVI|1|a|U|2202
9VVI|1|a|U|2203
9VVI|1|a|G|2204
*
9VVI|1|a|U|2220
9VVI|1|a|G|2221

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain h

50S ribosomal protein L9

Chain w

Large ribosomal subunit protein bL28