IL_9VXM_003
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAAGUAU*AGAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_003 not in the Motif Atlas
- Geometric match to IL_9E6Q_110
- Geometric discrepancy: 0.1228
- The information below is about IL_9E6Q_110
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9VXM|1|A|A|1739
9VXM|1|A|A|1740
9VXM|1|A|A|1741
9VXM|1|A|G|1742
9VXM|1|A|U|1743
9VXM|1|A|A|1744
9VXM|1|A|U|1745
*
9VXM|1|A|A|1753
9VXM|1|A|G|1754
9VXM|1|A|A|1755
9VXM|1|A|A|1756
9VXM|1|A|A|1757
9VXM|1|A|U|1758
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35m
- Chain H
- Large ribosomal subunit protein bL9m
- Chain M
- Large ribosomal subunit protein uL15m
- Chain X
- Large ribosomal subunit protein bL28m
- Chain i
- Large ribosomal subunit protein mL51
- Chain q
- Large ribosomal subunit protein mL64
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