IL_9VXM_007

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXM_007 not in the Motif Atlas

Homologous match to IL_7A0S_014

Geometric discrepancy: 0.0969

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9VXM|1|A|C|1904
9VXM|1|A|C|1905
9VXM|1|A|G|1906
*
9VXM|1|A|C|2016
9VXM|1|A|U|2017
9VXM|1|A|G|2018

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4m

Chain M

Large ribosomal subunit protein uL15m

Chain i

Large ribosomal subunit protein mL51