IL_9VXM_015
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCCACAG*CCCCUUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_015 not in the Motif Atlas
- Geometric match to IL_5XWG_002
- Geometric discrepancy: 0.2475
- The information below is about IL_5XWG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74768.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9VXM|1|A|C|2057
9VXM|1|A|C|2058
9VXM|1|A|C|2059
9VXM|1|A|A|2060
9VXM|1|A|C|2061
9VXM|1|A|A|2062
9VXM|1|A|G|2063
*
9VXM|1|A|C|2076
9VXM|1|A|C|2077
9VXM|1|A|C|2078
9VXM|1|A|C|2079
9VXM|1|A|U|2080
9VXM|1|A|U|2081
9VXM|1|A|G|2082
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein mL38
- Chain W
- Large ribosomal subunit protein bL27m
- Chain Z
- Large ribosomal subunit protein uL30m
- Chain f
- Large ribosomal subunit protein mL48
- Chain j
- Large ribosomal subunit protein mL52
- Chain o
- Large ribosomal subunit protein mL63
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