IL_9VXM_027

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXM_027 not in the Motif Atlas

Homologous match to IL_7A0S_060

Geometric discrepancy: 0.1471

The information below is about IL_7A0S_060

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.3

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

11

Unit IDs

9VXM|1|A|A|2467
9VXM|1|A|A|2468
9VXM|1|A|A|2469
*
9VXM|1|A|U|2658
9VXM|1|A|C|2659
9VXM|1|A|U|2660

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3m

Chain L

Large ribosomal subunit protein uL14m

Chain Q

Large ribosomal subunit protein bL19m