IL_9VXM_029
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_029 not in the Motif Atlas
- Geometric match to IL_8B0X_180
- Geometric discrepancy: 0.0758
- The information below is about IL_8B0X_180
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.3
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9VXM|1|A|G|2470
9VXM|1|A|G|2471
9VXM|1|A|A|2472
9VXM|1|A|A|2473
9VXM|1|A|C|2474
9VXM|1|A|U|2475
9VXM|1|A|C|2476
9VXM|1|A|G|2477
9VXM|1|A|G|2478
*
9VXM|1|A|C|2653
9VXM|1|A|U|2654
9VXM|1|A|G|2655
9VXM|1|A|U|2656
9VXM|1|A|C|2657
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3m
- Chain L
- Large ribosomal subunit protein uL14m
- Chain Q
- Large ribosomal subunit protein bL19m
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