IL_9VXM_030
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 9VXM|1|A|G|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_030 not in the Motif Atlas
- Homologous match to IL_7A0S_062
- Geometric discrepancy: 0.122
- The information below is about IL_7A0S_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.3
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
9VXM|1|A|A|2473
9VXM|1|A|C|2474
9VXM|1|A|U|2475
9VXM|1|A|C|2476
9VXM|1|A|G|2477
9VXM|1|A|G|2478
*
9VXM|1|A|C|2653
9VXM|1|A|U|2654
9VXM|1|A|G|2655
9VXM|1|A|U|2656
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3m
- Chain L
- Large ribosomal subunit protein uL14m
- Chain Q
- Large ribosomal subunit protein bL19m
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