IL_9VXM_042

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAACAG*CCAAACCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXM|1|A|A|2753
9VXM|1|A|A|2754
9VXM|1|A|A|2755
9VXM|1|A|C|2756
9VXM|1|A|A|2757
9VXM|1|A|G|2758
*
9VXM|1|A|C|2788
9VXM|1|A|C|2789
9VXM|1|A|A|2790
9VXM|1|A|A|2791
9VXM|1|A|A|2792
9VXM|1|A|C|2793
9VXM|1|A|C|2794
9VXM|1|A|U|2795

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2m

Chain H

Large ribosomal subunit protein bL9m

Chain X

Large ribosomal subunit protein bL28m