IL_9VXM_043

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UACCUAACAAAC*GUCCUAAACUA

Length

23 nucleotides

Bulged bases

9VXM|1|A|C|2762, 9VXM|1|A|A|2767, 9VXM|1|A|U|2781, 9VXM|1|A|A|2782

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXM|1|A|U|2759
9VXM|1|A|A|2760
9VXM|1|A|C|2761
9VXM|1|A|C|2762
9VXM|1|A|U|2763
9VXM|1|A|A|2764
9VXM|1|A|A|2765
9VXM|1|A|C|2766
9VXM|1|A|A|2767
9VXM|1|A|A|2768
9VXM|1|A|A|2769
9VXM|1|A|C|2770
*
9VXM|1|A|G|2777
9VXM|1|A|U|2778
9VXM|1|A|C|2779
9VXM|1|A|C|2780
9VXM|1|A|U|2781
9VXM|1|A|A|2782
9VXM|1|A|A|2783
9VXM|1|A|A|2784
9VXM|1|A|C|2785
9VXM|1|A|U|2786
9VXM|1|A|A|2787

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9m