IL_9VXM_045
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAG*CAAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_045 not in the Motif Atlas
- Geometric match to IL_9H3G_004
- Geometric discrepancy: 0.1879
- The information below is about IL_9H3G_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9VXM|1|A|C|2856
9VXM|1|A|U|2857
9VXM|1|A|A|2858
9VXM|1|A|A|2859
9VXM|1|A|G|2860
*
9VXM|1|A|C|2872
9VXM|1|A|A|2873
9VXM|1|A|A|2874
9VXM|1|A|A|2875
9VXM|1|A|G|2876
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33m
- Chain 3
- Large ribosomal subunit protein bL35m
- Chain 6
- Large ribosomal subunit protein mL38
- Chain P
- Large ribosomal subunit protein uL18m
- Chain W
- Large ribosomal subunit protein bL27m
- Chain p
- Large ribosomal subunit protein mL62
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