IL_9VXM_052

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*(PSU)GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXM_052 not in the Motif Atlas

Homologous match to IL_7A0S_088

Geometric discrepancy: 0.2849

The information below is about IL_7A0S_088

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

19

Unit IDs

9VXM|1|A|U|2994
9VXM|1|A|G|2995
*
9VXM|1|A|PSU|3067
9VXM|1|A|G|3068
9VXM|1|A|A|3069

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Aw

A/A-tRNA

Chain E

Large ribosomal subunit protein uL3m