IL_9VXM_075

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGUCAAUUU*AUUA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXM|1|AA|U|876
9VXM|1|AA|G|877
9VXM|1|AA|G|878
9VXM|1|AA|U|879
9VXM|1|AA|C|880
9VXM|1|AA|A|881
9VXM|1|AA|A|882
9VXM|1|AA|U|883
9VXM|1|AA|U|884
9VXM|1|AA|U|885
*
9VXM|1|AA|A|910
9VXM|1|AA|U|911
9VXM|1|AA|U|912
9VXM|1|AA|A|913

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS5m

Chain AJ

Small ribosomal subunit protein uS12m

Chain AO

Small ribosomal subunit protein mS40

Chain AZ

Small ribosomal subunit protein mS33

Chain Az

mRNA