IL_9VXM_079

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUCACCCCCUCCCCAAU*AACAUAU

Length

24 nucleotides

Bulged bases

9VXM|1|AA|C|954, 9VXM|1|AA|C|959, 9VXM|1|AA|C|960, 9VXM|1|AA|U|961, 9VXM|1|AA|C|962, 9VXM|1|AA|A|966, 9VXM|1|AA|A|1041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXM|1|AA|A|952
9VXM|1|AA|U|953
9VXM|1|AA|C|954
9VXM|1|AA|A|955
9VXM|1|AA|C|956
9VXM|1|AA|C|957
9VXM|1|AA|C|958
9VXM|1|AA|C|959
9VXM|1|AA|C|960
9VXM|1|AA|U|961
9VXM|1|AA|C|962
9VXM|1|AA|C|963
9VXM|1|AA|C|964
9VXM|1|AA|C|965
9VXM|1|AA|A|966
9VXM|1|AA|A|967
9VXM|1|AA|U|968
*
9VXM|1|AA|A|1036
9VXM|1|AA|A|1037
9VXM|1|AA|C|1038
9VXM|1|AA|A|1039
9VXM|1|AA|U|1040
9VXM|1|AA|A|1041
9VXM|1|AA|U|1042

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein bS6m

Chain AJ

Small ribosomal subunit protein uS12m

Chain AL

Small ribosomal subunit protein uS15m

Chain AN

Small ribosomal subunit protein uS17m

Chain AP

Small ribosomal subunit protein bS18m

Chain AS

Small ribosomal subunit protein mS23

Chain AT

Small ribosomal subunit protein mS25

Chain AU

Small ribosomal subunit protein mS26

Chain C

Small ribosomal subunit protein bS21m

Chain G

Small ribosomal subunit protein mS37