IL_9VXM_087

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACACUACG*UAAAACU

Length

16 nucleotides

Bulged bases

9VXM|1|AA|C|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXM|1|AA|A|1139
9VXM|1|AA|A|1140
9VXM|1|AA|C|1141
9VXM|1|AA|A|1142
9VXM|1|AA|C|1143
9VXM|1|AA|U|1144
9VXM|1|AA|A|1145
9VXM|1|AA|C|1146
9VXM|1|AA|G|1147
*
9VXM|1|AA|U|1158
9VXM|1|AA|A|1159
9VXM|1|AA|A|1160
9VXM|1|AA|A|1161
9VXM|1|AA|A|1162
9VXM|1|AA|C|1163
9VXM|1|AA|U|1164

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A3

Small ribosomal subunit protein mS38

Chain AJ

Small ribosomal subunit protein uS12m

Chain AL

Small ribosomal subunit protein uS15m