IL_9VXM_090

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAUC*GCCCU

Length

10 nucleotides

Bulged bases

9VXM|1|AA|U|1187, 9VXM|1|AA|C|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXM|1|AA|A|1186
9VXM|1|AA|U|1187
9VXM|1|AA|A|1188
9VXM|1|AA|U|1189
9VXM|1|AA|C|1190
*
9VXM|1|AA|G|1464
9VXM|1|AA|C|1465
9VXM|1|AA|C|1466
9VXM|1|AA|C|1467
9VXM|1|AA|U|1468

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7m

Chain AG

Small ribosomal subunit protein uS9m

Chain Az

mRNA

Chain G

Small ribosomal subunit protein mS37