IL_9VXM_094
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUAC*GUG
- Length
- 8 nucleotides
- Bulged bases
- 9VXM|1|AA|U|1259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VXM_094 not in the Motif Atlas
- Homologous match to IL_6CZR_154
- Geometric discrepancy: 0.1695
- The information below is about IL_6CZR_154
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.4
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9VXM|1|AA|U|1257
9VXM|1|AA|A|1258
9VXM|1|AA|U|1259
9VXM|1|AA|A|1260
9VXM|1|AA|C|1261
*
9VXM|1|AA|G|1334
9VXM|1|AA|U|1335
9VXM|1|AA|G|1336
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AC
- Small ribosomal subunit protein uS3m
- Chain AD
- Small ribosomal subunit protein uS5m
- Chain AH
- Small ribosomal subunit protein uS10m
- Chain AK
- Small ribosomal subunit protein uS14m
- Chain AZ
- Small ribosomal subunit protein mS33
- Chain Aw
- A/A-tRNA
- Chain Az
- mRNA
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