IL_9VXM_103

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXM_103 not in the Motif Atlas

Geometric match to IL_8B0X_177

Geometric discrepancy: 0.11

The information below is about IL_8B0X_177

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9VXM|1|AA|G|1489
9VXM|1|AA|U|1490
9VXM|1|AA|C|1491
*
9VXM|1|AA|G|1559
9VXM|1|AA|U|1560
9VXM|1|AA|C|1561

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain 8

Large ribosomal subunit protein mL40

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Small ribosomal subunit protein mS38

Chain Aw

A/A-tRNA

Chain Az

mRNA