IL_9VXM_106

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXM_106 not in the Motif Atlas

Geometric match to IL_8CRE_475

Geometric discrepancy: 0.1707

The information below is about IL_8CRE_475

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9VXM|1|AA|A|1507
9VXM|1|AA|C|1508
9VXM|1|AA|U|1509
9VXM|1|AA|U|1510
*
9VXM|1|AA|A|1540
9VXM|1|AA|U|1541
9VXM|1|AA|U|1542
9VXM|1|AA|U|1543

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain A3

Small ribosomal subunit protein mS38

Chain L

Large ribosomal subunit protein uL14m