IL_9VXN_053
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9VXN|1|L5|A|1650, 9VXN|1|L5|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXN|1|L5|OMG|1522
9VXN|1|L5|A|1523
9VXN|1|L5|A2M|1524
9VXN|1|L5|A|1525
9VXN|1|L5|G|1526
*
9VXN|1|L5|C|1648
9VXN|1|L5|U|1649
9VXN|1|L5|A|1650
9VXN|1|L5|G|1651
9VXN|1|L5|U|1652
9VXN|1|L5|A|1653
9VXN|1|L5|G|1654
9VXN|1|L5|C|1655
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- Large ribosomal subunit protein eL15
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lj
- Large ribosomal subunit protein eL37
Coloring options: