IL_9VXN_081

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

9VXN|1|L5|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXN_081 not in the Motif Atlas

Homologous match to IL_8GLP_085

Geometric discrepancy: 0.0499

The information below is about IL_8GLP_085

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9VXN|1|L5|G|2299
9VXN|1|L5|A|2300
9VXN|1|L5|G|2301
*
9VXN|1|L5|C|2334
9VXN|1|L5|C|2335

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain Le

Large ribosomal subunit protein eL32

Chain Lr

Large ribosomal subunit protein eL28