IL_9VXN_105

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

9VXN|1|L5|G|2903, 9VXN|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|G|2901
9VXN|1|L5|G|2902
9VXN|1|L5|G|2903
9VXN|1|L5|U|2904
9VXN|1|L5|C|2905
*
9VXN|1|L5|G|3589
9VXN|1|L5|G|3590
9VXN|1|L5|C|3591
9VXN|1|L5|G|3592
9VXN|1|L5|C|3593
9VXN|1|L5|C|3594
9VXN|1|L5|U|3595
9VXN|1|L5|A|3596
9VXN|1|L5|G|3597
9VXN|1|L5|C|3598

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19