IL_9VXN_121
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAAG*CGAC
- Length
- 43 nucleotides
- Bulged bases
- 9VXN|1|L5|C|4096, 9VXN|1|L5|G|4099, 9VXN|1|L5|G|4104, 9VXN|1|L5|G|4107, 9VXN|1|L5|G|4108, 9VXN|1|L5|G|4109, 9VXN|1|L5|G|4115, 9VXN|1|L5|C|4116, 9VXN|1|L5|U|4117, 9VXN|1|L5|U|4118, 9VXN|1|L5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXN|1|L5|G|4091
9VXN|1|L5|G|4092
9VXN|1|L5|G|4093
9VXN|1|L5|G|4094
9VXN|1|L5|G|4095
9VXN|1|L5|C|4096
9VXN|1|L5|G|4097
9VXN|1|L5|A|4098
9VXN|1|L5|G|4099
9VXN|1|L5|C|4100
9VXN|1|L5|C|4101
9VXN|1|L5|C|4102
9VXN|1|L5|C|4103
9VXN|1|L5|G|4104
9VXN|1|L5|A|4105
9VXN|1|L5|G|4106
9VXN|1|L5|G|4107
9VXN|1|L5|G|4108
9VXN|1|L5|G|4109
9VXN|1|L5|C|4110
9VXN|1|L5|U|4111
9VXN|1|L5|C|4112
9VXN|1|L5|U|4113
9VXN|1|L5|C|4114
9VXN|1|L5|G|4115
9VXN|1|L5|C|4116
9VXN|1|L5|U|4117
9VXN|1|L5|U|4118
9VXN|1|L5|C|4119
9VXN|1|L5|U|4120
9VXN|1|L5|G|4121
9VXN|1|L5|G|4122
9VXN|1|L5|C|4123
9VXN|1|L5|G|4124
9VXN|1|L5|C|4125
9VXN|1|L5|C|4126
9VXN|1|L5|A|4127
9VXN|1|L5|A|4128
9VXN|1|L5|G|4129
*
9VXN|1|L5|C|4155
9VXN|1|L5|G|4156
9VXN|1|L5|A|4157
9VXN|1|L5|C|4158
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LG
- Large ribosomal subunit protein eL8
- Chain LX
- Large ribosomal subunit protein uL23
- Chain LZ
- Large ribosomal subunit protein eL27
- Chain Lc
- Large ribosomal subunit protein eL30
- Chain Lg
- Large ribosomal subunit protein eL34
- Chain Lp
- Large ribosomal subunit protein eL43
- Chain SB
- Small ribosomal subunit protein eS1
Coloring options: