IL_9VXN_155

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

9VXN|1|L5|C|4900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXN_155 not in the Motif Atlas

Geometric match to IL_3DIL_001

Geometric discrepancy: 0.3488

The information below is about IL_3DIL_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9VXN|1|L5|G|4899
9VXN|1|L5|C|4900
9VXN|1|L5|G|4901
*
9VXN|1|L5|C|4920
9VXN|1|L5|C|4921

Current chains

Chain L5

28S rRNA

Nearby chains