IL_9VXN_197

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

AAUACAG*CCUGUAAUU

Length

16 nucleotides

Bulged bases

9VXN|1|S2|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|S2|A|528
9VXN|1|S2|A|529
9VXN|1|S2|U|530
9VXN|1|S2|A|531
9VXN|1|S2|C|532
9VXN|1|S2|A|533
9VXN|1|S2|G|534
*
9VXN|1|S2|C|549
9VXN|1|S2|C|550
9VXN|1|S2|U|551
9VXN|1|S2|G|552
9VXN|1|S2|U|553
9VXN|1|S2|A|554
9VXN|1|S2|A|555
9VXN|1|S2|U|556
9VXN|1|S2|U|557

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS4

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein