IL_9VXN_227

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

9VXN|1|S2|G|1207

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VXN_227 not in the Motif Atlas

Homologous match to IL_9H3G_211

Geometric discrepancy: 0.0795

The information below is about IL_9H3G_211

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9VXN|1|S2|G|1206
9VXN|1|S2|G|1207
9VXN|1|S2|A|1208
*
9VXN|1|S2|U|1691
9VXN|1|S2|PSU|1692

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sa

Small ribosomal subunit protein eS26

Chain w

mRNA