IL_9VXN_249

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|S2|G|1604
9VXN|1|S2|G|1605
9VXN|1|S2|G|1606
9VXN|1|S2|A|1607
9VXN|1|S2|U|1608
9VXN|1|S2|C|1609
9VXN|1|S2|G|1610
*
9VXN|1|S2|C|1629
9VXN|1|S2|A|1630
9VXN|1|S2|U|1631
9VXN|1|S2|G|1632
9VXN|1|S2|A|1633
9VXN|1|S2|A|1634
9VXN|1|S2|C|1635

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS7

Chain SS

Small ribosomal subunit protein uS13

Chain ST

Small ribosomal subunit protein eS19