IL_9WNR_056

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_056 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.2752

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WNR|1|A|C|1303
9WNR|1|A|G|1304
9WNR|1|A|G|1305
9WNR|1|A|A|1306
9WNR|1|A|U|1307
9WNR|1|A|U|1308
*
9WNR|1|A|A|1329
9WNR|1|A|U|1330
9WNR|1|A|G|1331
9WNR|1|A|A|1332
9WNR|1|A|A|1333
9WNR|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13