IL_9WNR_162

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_162 not in the Motif Atlas

Homologous match to IL_7A0S_081

Geometric discrepancy: 0.158

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9WNR|1|b|C|2350
9WNR|1|b|G|2351
9WNR|1|b|A|2352
9WNR|1|b|G|2353
*
9WNR|1|b|C|2364
9WNR|1|b|G|2365
9WNR|1|b|A|2366
9WNR|1|b|G|2367

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain y

Large ribosomal subunit protein bL27