IL_9WNR_186

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNR_186 not in the Motif Atlas

Geometric match to IL_8B0X_169

Geometric discrepancy: 0.0797

The information below is about IL_8B0X_169

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9WNR|1|b|G|2843
9WNR|1|b|G|2844
9WNR|1|b|U|2845
9WNR|1|b|G|2846
*
9WNR|1|b|C|2870
9WNR|1|b|U|2871
9WNR|1|b|A|2872
9WNR|1|b|A|2873
9WNR|1|b|C|2874

Current chains

Chain b

23S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein bL17

Chain q

Large ribosomal subunit protein bL19