IL_9WW4_001

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9WW4|1|AC|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_001 not in the Motif Atlas

Homologous match to IL_8GLP_001

Geometric discrepancy: 0.0755

The information below is about IL_8GLP_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9WW4|1|AA|C|6
9WW4|1|AA|C|7
*
9WW4|1|AC|G|149
9WW4|1|AC|C|150
9WW4|1|AC|G|151

Current chains

Chain AA

28S rRNA (3773-MER)

Chain AC

5.8S rRNA (156-MER)

Nearby chains

Chain AJ

60S ribosomal protein L7a

Chain AP

60S ribosomal protein L15

Chain AZ

60S ribosomal protein L23a