IL_9WW4_006
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW4_006 not in the Motif Atlas
- Homologous match to IL_8GLP_006
- Geometric discrepancy: 0.0378
- The information below is about IL_8GLP_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.6
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9WW4|1|AA|C|81
9WW4|1|AA|U|82
9WW4|1|AA|C|83
9WW4|1|AA|A|84
9WW4|1|AA|G|85
9WW4|1|AA|U|86
9WW4|1|AA|A|87
9WW4|1|AA|A|88
*
9WW4|1|AA|U|96
9WW4|1|AA|G|97
9WW4|1|AA|A|98
9WW4|1|AA|A|99
9WW4|1|AA|C|100
9WW4|1|AA|A|101
9WW4|1|AA|G|102
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AN
- 60S ribosomal protein L13
- Chain AP
- 60S ribosomal protein L15
- Chain AS
- 60S ribosomal protein L18
- Chain Ac
- Large ribosomal subunit protein uL15
Coloring options: