IL_9WW4_024

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9WW4|1|AA|G|483, 9WW4|1|AA|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_024 not in the Motif Atlas

Geometric match to IL_9SUM_145

Geometric discrepancy: 0.12

The information below is about IL_9SUM_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9WW4|1|AA|G|482
9WW4|1|AA|G|483
9WW4|1|AA|U|484
9WW4|1|AA|C|485
*
9WW4|1|AA|G|671
9WW4|1|AA|C|672

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain As

60S ribosomal protein L28