IL_9WW4_025

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9WW4|1|AA|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_025 not in the Motif Atlas

Homologous match to IL_8GLP_028

Geometric discrepancy: 0.425

The information below is about IL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9WW4|1|AA|G|487
9WW4|1|AA|G|488
*
9WW4|1|AA|C|665
9WW4|1|AA|G|666
9WW4|1|AA|A|667
9WW4|1|AA|C|668
9WW4|1|AA|C|669

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain As

60S ribosomal protein L28