IL_9WW4_032

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

9WW4|1|AA|G|729, 9WW4|1|AA|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_032 not in the Motif Atlas

Homologous match to IL_8GLP_036

Geometric discrepancy: 0.0514

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9WW4|1|AA|C|727
9WW4|1|AA|U|728
9WW4|1|AA|G|729
9WW4|1|AA|G|730
9WW4|1|AA|G|731
*
9WW4|1|AA|C|938
9WW4|1|AA|G|939

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AI

60S ribosomal protein L7

Chain AO

60S ribosomal protein L14

Chain AU

60S ribosomal protein L18a