IL_9WW4_033
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- AAGG*CAGCAGCACU
- Length
- 14 nucleotides
- Bulged bases
- 9WW4|1|AA|A|932, 9WW4|1|AA|C|934, 9WW4|1|AA|A|935, 9WW4|1|AA|C|936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW4_033 not in the Motif Atlas
- Homologous match to IL_8GLP_037
- Geometric discrepancy: 0.1235
- The information below is about IL_8GLP_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70469.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9WW4|1|AA|A|732
9WW4|1|AA|A|733
9WW4|1|AA|G|734
9WW4|1|AA|G|735
*
9WW4|1|AA|C|928
9WW4|1|AA|A|929
9WW4|1|AA|G|930
9WW4|1|AA|C|931
9WW4|1|AA|A|932
9WW4|1|AA|G|933
9WW4|1|AA|C|934
9WW4|1|AA|A|935
9WW4|1|AA|C|936
9WW4|1|AA|U|937
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AF
- Large ribosomal subunit protein uL4
- Chain AO
- 60S ribosomal protein L14
- Chain AU
- 60S ribosomal protein L18a
Coloring options: