IL_9WW4_037

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_037 not in the Motif Atlas

Geometric match to IL_8B0X_183

Geometric discrepancy: 0.1897

The information below is about IL_8B0X_183

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9WW4|1|AA|C|984
9WW4|1|AA|C|985
*
9WW4|1|AA|G|1068
9WW4|1|AA|G|1069
9WW4|1|AA|G|1070

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AH

Large ribosomal subunit protein eL6