IL_9WW4_038

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

9WW4|1|AA|A|1238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_038 not in the Motif Atlas

Homologous match to IL_8GLP_041

Geometric discrepancy: 0.0939

The information below is about IL_8GLP_041

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9WW4|1|AA|G|1073
9WW4|1|AA|G|1074
*
9WW4|1|AA|C|1237
9WW4|1|AA|A|1238
9WW4|1|AA|C|1239

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AH

Large ribosomal subunit protein eL6

Chain AI

60S ribosomal protein L7

Chain Ad

60S ribosomal protein L29