IL_9WW4_050

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_050 not in the Motif Atlas

Homologous match to IL_8GLP_054

Geometric discrepancy: 0.0524

The information below is about IL_8GLP_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9WW4|1|AA|C|1474
9WW4|1|AA|G|1475
9WW4|1|AA|C|1476
*
9WW4|1|AA|G|1489
9WW4|1|AA|G|1490

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AN

60S ribosomal protein L13

Chain Ac

Large ribosomal subunit protein uL15

Chain Ad

60S ribosomal protein L29

Chain Aq

60S ribosomal protein L36a