IL_9WW4_053

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(OMG)A(A2M)AG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9WW4|1|AA|A|1650, 9WW4|1|AA|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_053 not in the Motif Atlas

Homologous match to IL_8GLP_290

Geometric discrepancy: 0.0432

The information below is about IL_8GLP_290

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73855.4

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

12

Unit IDs

9WW4|1|AA|OMG|1522
9WW4|1|AA|A|1523
9WW4|1|AA|A2M|1524
9WW4|1|AA|A|1525
9WW4|1|AA|G|1526
*
9WW4|1|AA|C|1648
9WW4|1|AA|U|1649
9WW4|1|AA|A|1650
9WW4|1|AA|G|1651
9WW4|1|AA|U|1652
9WW4|1|AA|A|1653
9WW4|1|AA|G|1654
9WW4|1|AA|C|1655

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AN

60S ribosomal protein L13

Chain AP

60S ribosomal protein L15

Chain Ac

Large ribosomal subunit protein uL15

Chain Al

60S ribosomal protein L37