IL_9WW4_059

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

9WW4|1|AA|OMG|1625, 9WW4|1|AA|A|1637, 9WW4|1|AA|A|1638, 9WW4|1|AA|U|1639

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_059 not in the Motif Atlas

Homologous match to IL_8GLP_062

Geometric discrepancy: 0.0317

The information below is about IL_8GLP_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.4

Basepair signature

cWW-cWW

Number of instances in this motif group

11

Unit IDs

9WW4|1|AA|G|1624
9WW4|1|AA|OMG|1625
9WW4|1|AA|G|1626
*
9WW4|1|AA|U|1636
9WW4|1|AA|A|1637
9WW4|1|AA|A|1638
9WW4|1|AA|U|1639
9WW4|1|AA|C|1640

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain AP

60S ribosomal protein L15

Chain AR

60S ribosomal protein L17

Chain Al

60S ribosomal protein L37