IL_9WW4_065
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GCGAA(PSU)*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9WW4|1|AA|G|1741
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW4_065 not in the Motif Atlas
- Homologous match to IL_9H3G_046
- Geometric discrepancy: 0.0816
- The information below is about IL_9H3G_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.4
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9WW4|1|AA|G|1739
9WW4|1|AA|C|1740
9WW4|1|AA|G|1741
9WW4|1|AA|A|1742
9WW4|1|AA|A|1743
9WW4|1|AA|PSU|1744
*
9WW4|1|AA|A|1786
9WW4|1|AA|A|1787
9WW4|1|AA|A|1788
9WW4|1|AA|C|1789
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- Large ribosomal subunit protein uL18
- Chain AL
- Ribosomal protein uL16-like
- Chain AV
- 60S ribosomal protein L21
Coloring options: