IL_9WW4_072

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UUAAG*CCAUA

Length

10 nucleotides

Bulged bases

9WW4|1|AA|U|2070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_072 not in the Motif Atlas

Homologous match to IL_8GLP_075

Geometric discrepancy: 0.0506

The information below is about IL_8GLP_075

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9WW4|1|AA|U|1905
9WW4|1|AA|U|1906
9WW4|1|AA|A|1907
9WW4|1|AA|A|1908
9WW4|1|AA|G|1909
*
9WW4|1|AA|C|2067
9WW4|1|AA|C|2068
9WW4|1|AA|A|2069
9WW4|1|AA|U|2070
9WW4|1|AA|A|2071

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AI

60S ribosomal protein L7

Chain AS

60S ribosomal protein L18

Chain Ag

60S ribosomal protein L32

Chain Ah

60S ribosomal protein L35a