IL_9WW4_074

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

9WW4|1|AA|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_074 not in the Motif Atlas

Homologous match to IL_8GLP_077

Geometric discrepancy: 0.1014

The information below is about IL_8GLP_077

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9WW4|1|AA|U|1918
9WW4|1|AA|G|1919
9WW4|1|AA|C|1920
*
9WW4|1|AA|G|2063
9WW4|1|AA|G|2064

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AI

60S ribosomal protein L7

Chain AO

60S ribosomal protein L14

Chain AQ

60S ribosomal protein L13a

Chain AU

60S ribosomal protein L18a

Chain Ah

60S ribosomal protein L35a