IL_9WW4_086

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(OMU)GAAC*GAA

Length

8 nucleotides

Bulged bases

9WW4|1|AA|A|2428

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_086 not in the Motif Atlas

Homologous match to IL_8GLP_301

Geometric discrepancy: 0.0835

The information below is about IL_8GLP_301

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.4

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

9WW4|1|AA|OMU|2415
9WW4|1|AA|G|2416
9WW4|1|AA|A|2417
9WW4|1|AA|A|2418
9WW4|1|AA|C|2419
*
9WW4|1|AA|G|2427
9WW4|1|AA|A|2428
9WW4|1|AA|A|2429

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AR

60S ribosomal protein L17

Chain AT

60S ribosomal protein L19

Chain An

60S ribosomal protein L39