IL_9WW4_087

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUGAG*CGAAAG

Length

11 nucleotides

Bulged bases

9WW4|1|AA|A|2512, 9WW4|1|AA|A|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_087 not in the Motif Atlas

Homologous match to IL_8GLP_091

Geometric discrepancy: 0.042

The information below is about IL_8GLP_091

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9WW4|1|AA|C|2446
9WW4|1|AA|U|2447
9WW4|1|AA|G|2448
9WW4|1|AA|A|2449
9WW4|1|AA|G|2450
*
9WW4|1|AA|C|2509
9WW4|1|AA|G|2510
9WW4|1|AA|A|2511
9WW4|1|AA|A|2512
9WW4|1|AA|A|2513
9WW4|1|AA|G|2514

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AD

60S ribosomal protein L8

Chain Ai

60S ribosomal protein L34

Chain Al

60S ribosomal protein L37

Chain An

60S ribosomal protein L39