IL_9WW4_115

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_115 not in the Motif Atlas

Homologous match to IL_8GLP_127

Geometric discrepancy: 0.0429

The information below is about IL_8GLP_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.5

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

13

Unit IDs

9WW4|1|AA|G|3895
9WW4|1|AA|C|3896
9WW4|1|AA|G|3897
9WW4|1|AA|G|3898
*
9WW4|1|AA|U|4563
9WW4|1|AA|A|4564
9WW4|1|AA|C|4565

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AQ

60S ribosomal protein L13a